
*********************************
Running Evolutionary Trace on 1ydmC:
Current directory:  /scratch/tmp/1ydmC
Current date and time:  Tue Feb 13 16:28:30 CST 2007
Current user:  serdin
Platform:  Linux
Machine info:  Linux n111.cluster 2.6.11.11 #1 SMP Tue Jun 21 11:12:46 EDT 2005 x86_64 x86_64 x86_64 GNU/Linux
Command used to run Trace analysis:
EasyTrace5.01.pl -d /home/serdin/Custom/custom -e 0.05 -f 500 -u 500 -v 1e-250 -w 0.05 -x 20 -y 95 -z 0.5 -T 0.8 -U 0.9 -a blosum62 -o /home/serdin/pdbchains/1ydmC.pdb -R 1ydmC


BLAST database searched:  /home/serdin/Custom/custom
BLAST e-value:  0.05
Maximum number of BLAST sequences:  500
Maximum number of subsequences to extract from BLAST results:  500
Minimum subsequence e-value:  1e-250
Maximum subsequence e-value:  0.05
Minimum subsequence percent identity to query:  20
Maximum subsequence percent identity to query:  95
Minimum fractional length of BLAST HSP (compared to query):  0.5
Alignment-generation method:  clustalw
Identical sequences will be removed
Short sequences will be removed (if length is less than 0.8 * length of query)
Fragments will be removed (if length is less than 0.9 * length of query) and sequences re-aligned
Tree-generation method:  UPGMA using matrix:  blosum62
Structure Trace results are mapped onto:  query_1ydmC.pdb  (derived from custom structure in /home/serdin/pdbchains/1ydmC.pdb)
Name of sequence to map onto structure:  query_1ydmC
An ETViewer project file will be created in 1ydmC.etvx.
Real-valued Trace option is specified.

Extracting chain/sequence from PDB file...
	command:  ExtractSeqFromPDB5.pl /home/serdin/pdbchains/1ydmC.pdb query_1ydmC.pdb query_1ydmC.fasta -b -f -c C -d
	output:  

BLAST search...
	command:  blastall -p blastp -d /home/serdin/Custom/custom -I T -i query_1ydmC.fasta -o 1ydmC.blast -e 0.05 -v 500 -b 500
	output:  

Selecting and retrieving homologs...

*********************************

	command:  SelectInputToTrace9.2.pl -cutoff=0.5 -maxseqs=500 -minevalue=1e-250 -maxevalue=0.05 -minpid=20 -maxpid=95 -database=/home/serdin/Custom/custom 1ydmC.blast 1ydmC.input
	output:  
Requesting sequence 16079545...	Extracting...(16079545-1 ignored - alignment has sequence identity above maximum [e-value 7e-96, %id 97, %length 0.99])
Requesting sequence 52081025...	Extracting... 52081025-1 (e-value 9e-46, %id 49, %length 0.98)
Requesting sequence 49478598...	Extracting... 49478598-1 (e-value 3e-37, %id 47, %length 0.95)
Requesting sequence 30022345...	Extracting... 30022345-1 (e-value 5e-37, %id 47, %length 0.95)
Requesting sequence 52141234...	Extracting... 52141234-1 (e-value 8e-37, %id 47, %length 0.95)
Requesting sequence 42783391...	Extracting... 42783391-1 (e-value 8e-37, %id 47, %length 0.95)
Requesting sequence 30264337...	Extracting... 30264337-1 (e-value 1e-36, %id 47, %length 0.95)
Requesting sequence 75759765...	Extracting... 75759765-1 (e-value 5e-36, %id 47, %length 0.95)
Requesting sequence 89207550...	Extracting... 89207550-1 (e-value 9e-36, %id 47, %length 0.95)
Requesting sequence 47567827...	Extracting... 47567827-1 (e-value 2e-35, %id 46, %length 0.95)
Requesting sequence 56420984...	Extracting... 56420984-1 (e-value 8e-34, %id 46, %length 0.84)
Requesting sequence 89201783...	Extracting... 89201783-1 (e-value 1e-32, %id 43, %length 0.97)
Requesting sequence 23099379...	Extracting... 23099379-1 (e-value 1e-31, %id 40, %length 0.96)
Requesting sequence 89099185...	Extracting... 89099185-1 (e-value 7e-30, %id 43, %length 0.84)
Requesting sequence 68054441...	Extracting... 68054441-1 (e-value 3e-29, %id 40, %length 0.98)
Requesting sequence 116515920...	Extracting... 116515920-1 (e-value 1e-27, %id 42, %length 0.96)
Requesting sequence 15903946...	Extracting... 15903946-1 (e-value 1e-27, %id 42, %length 0.96)
Requesting sequence 28378275...	Extracting... 28378275-1 (e-value 1e-26, %id 42, %length 0.93)
Requesting sequence 46907562...	Extracting... 46907562-1 (e-value 6e-26, %id 41, %length 0.93)
Requesting sequence 15901910...	Extracting... 15901910-1 (e-value 8e-26, %id 41, %length 0.96)
Requesting sequence 16800441...	Extracting... 16800441-1 (e-value 1e-25, %id 41, %length 0.93)
Requesting sequence 116490827...	Extracting... 116490827-1 (e-value 2e-25, %id 40, %length 0.93)
Requesting sequence 16803376...	Extracting... 16803376-1 (e-value 2e-25, %id 40, %length 0.93)
Requesting sequence 15613980...	Extracting... 15613980-1 (e-value 3e-25, %id 41, %length 0.8)
Requesting sequence 116872767...	Extracting... 116872767-1 (e-value 4e-25, %id 43, %length 0.89)
Requesting sequence 78042640...	Extracting... 78042640-1 (e-value 3e-24, %id 39, %length 0.98)
Requesting sequence 90961525...	Extracting... 90961525-1 (e-value 7e-24, %id 39, %length 0.85)
Requesting sequence 116617900...	Extracting... 116617900-1 (e-value 7e-24, %id 37, %length 0.91)
Requesting sequence 77745401...	Extracting... 77745401-1 (e-value 4e-23, %id 44, %length 0.69)
Requesting sequence 69250416...	Extracting... 69250416-1 (e-value 5e-23, %id 41, %length 0.84)
Requesting sequence 87311666...	Extracting... 87311666-1 (e-value 1e-22, %id 34, %length 0.96)
Requesting sequence 55821809...	Extracting... 55821809-1 (e-value 1e-22, %id 38, %length 0.94)
Requesting sequence 116628517...	Extracting... 116628517-1 (e-value 1e-22, %id 38, %length 0.94)
Requesting sequence 106895766...	Extracting... 106895766-1 (e-value 2e-22, %id 36, %length 0.98)
Requesting sequence 77687138...	Extracting... 77687138-1 (e-value 4e-22, %id 36, %length 0.98)
Requesting sequence 116492497...	Extracting... 116492497-1 (e-value 7e-22, %id 38, %length 0.81)
Requesting sequence 29377263...	Extracting... 29377263-1 (e-value 7e-22, %id 36, %length 0.95)
Requesting sequence 116183301...	Extracting... 116183301-1 (e-value 1e-21, %id 42, %length 0.96)
Requesting sequence 56963487...	Extracting... 56963487-1 (e-value 3e-21, %id 41, %length 0.78)
Requesting sequence 22536586...	Extracting... 22536586-1 (e-value 8e-21, %id 43, %length 0.75)
Requesting sequence 77414747...	Extracting... 77414747-1 (e-value 8e-21, %id 42, %length 0.75)
Requesting sequence 25010511...	Extracting... 25010511-1 (e-value 2e-20, %id 42, %length 0.75)
Requesting sequence 116494281...	Extracting... 116494281-1 (e-value 4e-20, %id 36, %length 0.79)
Requesting sequence 116333636...	Extracting... 116333636-1 (e-value 5e-20, %id 38, %length 0.85)
Requesting sequence 91229535...	Extracting... 91229535-1 (e-value 9e-20, %id 43, %length 0.8)
Requesting sequence 98660587...	Extracting... 98660587-1 (e-value 2e-19, %id 35, %length 0.98)
Requesting sequence 24378819...	Extracting... 24378819-1 (e-value 2e-19, %id 36, %length 0.92)
Requesting sequence 3192049...	Extracting... 3192049-1 (e-value 2e-19, %id 36, %length 0.92)
Requesting sequence 83590966...	Extracting... 83590966-1 (e-value 6e-19, %id 34, %length 0.97)
Requesting sequence 28899365...	Extracting... 28899365-1 (e-value 6e-19, %id 42, %length 0.8)
Requesting sequence 67873285...	Extracting... 67873285-1 (e-value 9e-19, %id 34, %length 0.97)
Requesting sequence 15606807...	Extracting... 15606807-1 (e-value 9e-19, %id 35, %length 0.97)
Requesting sequence 116630013...	Extracting... 116630013-1 (e-value 1e-18, %id 34, %length 0.94)
Requesting sequence 70726367...	Extracting... 70726367-1 (e-value 2e-18, %id 36, %length 0.94)
Requesting sequence 42519494...	Extracting... 42519494-1 (e-value 3e-18, %id 38, %length 0.72)
Requesting sequence 81428943...	Extracting... 81428943-1 (e-value 3e-18, %id 34, %length 0.84)
Requesting sequence 15672151...	Extracting... 15672151-1 (e-value 6e-18, %id 35, %length 0.92)
Requesting sequence 77956688...	Extracting... 77956688-1 (e-value 2e-17, %id 35, %length 0.78)
Requesting sequence 77978889...	Extracting... 77978889-1 (e-value 2e-17, %id 36, %length 0.78)
Requesting sequence 51597498...	Extracting... 51597498-1 (e-value 7e-17, %id 35, %length 0.79)
Requesting sequence 110803776...	Extracting... 110803776-1 (e-value 1e-16, %id 29, %length 0.98)
Requesting sequence 16121218...	Extracting... 16121218-1 (e-value 1e-16, %id 35, %length 0.79)
Requesting sequence 116326515...	Extracting... 116326515-1 (e-value 1e-16, %id 33, %length 0.94)
Requesting sequence 77961472...	Extracting... 77961472-1 (e-value 1e-16, %id 34, %length 0.78)
Requesting sequence 49483799...	Extracting... 49483799-1 (e-value 2e-16, %id 34, %length 0.78)
Requesting sequence 77414930...	Extracting... 77414930-1 (e-value 2e-16, %id 45, %length 0.6)
Requesting sequence 32473682...	Extracting... 32473682-1 (e-value 2e-16, %id 33, %length 0.8)
Requesting sequence 15924540...	Extracting... 15924540-1 (e-value 2e-16, %id 34, %length 0.78)
Requesting sequence 37527472...	Extracting... 37527472-1 (e-value 2e-16, %id 32, %length 0.96)
Requesting sequence 90582229...	Extracting... 90582229-1 (e-value 2e-16, %id 34, %length 0.78)
Requesting sequence 57651943...	Extracting... 57651943-1 (e-value 2e-16, %id 34, %length 0.78)
Requesting sequence 15642475...	Extracting... 15642475-1 (e-value 2e-16, %id 32, %length 0.97)
Requesting sequence 75814146...	Extracting... 75814146-1 (e-value 2e-16, %id 32, %length 0.97)
Requesting sequence 106888037...	Extracting... 106888037-1 (e-value 3e-16, %id 32, %length 0.97)
Requesting sequence 116216720...	Extracting... 116216720-1 (e-value 3e-16, %id 34, %length 0.81)
Requesting sequence 27364918...	Extracting... 27364918-1 (e-value 3e-16, %id 37, %length 0.8)
Requesting sequence 88946406...	Extracting... 88946406-1 (e-value 3e-16, %id 33, %length 0.98)
Requesting sequence 73662515...	Extracting... 73662515-1 (e-value 4e-16, %id 31, %length 0.93)
Requesting sequence 109899808...	Extracting... 109899808-1 (e-value 6e-16, %id 31, %length 0.98)
Requesting sequence 59712711...	Extracting... 59712711-1 (e-value 6e-16, %id 34, %length 0.96)
Requesting sequence 118728413...	Extracting... 118728413-1 (e-value 6e-16, %id 31, %length 0.97)
Requesting sequence 27468154...	Extracting... 27468154-1 (e-value 8e-16, %id 33, %length 0.8)
Requesting sequence 75178804...	Extracting... 75178804-1 (e-value 8e-16, %id 35, %length 0.82)
Requesting sequence 114046127...	Extracting... 114046127-1 (e-value 8e-16, %id 35, %length 0.77)
Requesting sequence 116218785...	Extracting... 116218785-1 (e-value 8e-16, %id 32, %length 0.97)
Requesting sequence 82499371...	Extracting... 82499371-1 (e-value 1e-15, %id 35, %length 0.89)
Requesting sequence 118067133...	Extracting... 118067133-1 (e-value 1e-15, %id 33, %length 0.94)
Requesting sequence 18311306...	Extracting... 18311306-1 (e-value 1e-15, %id 28, %length 0.98)
Requesting sequence 86146375...	Extracting... 86146375-1 (e-value 1e-15, %id 36, %length 0.96)
Requesting sequence 113947855...	Extracting... 113947855-1 (e-value 1e-15, %id 30, %length 0.98)
Requesting sequence 109647345...	Extracting... 109647345-1 (e-value 2e-15, %id 32, %length 0.94)
Requesting sequence 89896718...	Extracting... 89896718-1 (e-value 2e-15, %id 32, %length 0.94)
Requesting sequence 110799478...	Extracting... 110799478-1 (e-value 2e-15, %id 28, %length 0.98)
Requesting sequence 82751153...	Extracting... 82751153-1 (e-value 3e-15, %id 34, %length 0.78)
Requesting sequence 118745036...	Extracting... 118745036-1 (e-value 3e-15, %id 38, %length 0.83)
Requesting sequence 77974490...	Extracting... 77974490-1 (e-value 3e-15, %id 31, %length 0.83)
Requesting sequence 110806813...	Extracting... 110806813-1 (e-value 3e-15, %id 32, %length 0.97)
Requesting sequence 118444169...	Extracting... 118444169-1 (e-value 3e-15, %id 29, %length 0.95)
Requesting sequence 84390086...	Extracting... 84390086-1 (e-value 5e-15, %id 35, %length 0.96)
Requesting sequence 71280724...	Extracting... 71280724-1 (e-value 6e-15, %id 36, %length 0.96)
Requesting sequence 113971666...	Extracting... 113971666-1 (e-value 8e-15, %id 34, %length 0.77)
Requesting sequence 16761842...	Extracting... 16761842-1 (e-value 8e-15, %id 34, %length 0.82)
Requesting sequence 24372363...	Extracting... 24372363-1 (e-value 8e-15, %id 33, %length 0.77)
Requesting sequence 38704126...	Extracting... 38704126-1 (e-value 1e-14, %id 34, %length 0.82)
Requesting sequence 75187627...	Extracting... 75187627-1 (e-value 1e-14, %id 34, %length 0.82)
Requesting sequence 82778324...	Extracting... 82778324-1 (e-value 1e-14, %id 34, %length 0.82)
Requesting sequence 62181572...	Extracting... 62181572-1 (e-value 1e-14, %id 34, %length 0.82)
Requesting sequence 78222395...	Extracting... 78222395-1 (e-value 1e-14, %id 33, %length 0.98)
Requesting sequence 49176282...	Extracting... 49176282-1 (e-value 1e-14, %id 34, %length 0.82)
Requesting sequence 30064222...	Extracting... 30064222-1 (e-value 1e-14, %id 34, %length 0.82)
Requesting sequence 118193841...	Extracting... 118193841-1 (e-value 1e-14, %id 34, %length 0.81)
Requesting sequence 75196863...	Extracting... 75196863-1 (e-value 2e-14, %id 34, %length 0.82)
Requesting sequence 75241292...	Extracting... 75241292-1 (e-value 2e-14, %id 34, %length 0.82)
Requesting sequence 26249328...	Extracting... 26249328-1 (e-value 2e-14, %id 34, %length 0.82)
Requesting sequence 110643059...	Extracting... 110643059-1 (e-value 2e-14, %id 34, %length 0.82)
Requesting sequence 58337772...	Extracting... 58337772-1 (e-value 2e-14, %id 36, %length 0.78)
Requesting sequence 16766362...	Extracting... 16766362-1 (e-value 2e-14, %id 34, %length 0.82)
Requesting sequence 89074089...	Extracting... 89074089-1 (e-value 2e-14, %id 30, %length 0.94)
Requesting sequence 90580303...	Extracting... 90580303-1 (e-value 3e-14, %id 30, %length 0.9)
Requesting sequence 119775858...	Extracting... 119775858-1 (e-value 3e-14, %id 33, %length 0.8)
Requesting sequence 54310218...	Extracting... 54310218-1 (e-value 3e-14, %id 30, %length 0.98)
Requesting sequence 82747599...	Extracting... 82747599-1 (e-value 3e-14, %id 30, %length 0.97)
Requesting sequence 117921943...	Extracting... 117921943-1 (e-value 4e-14, %id 32, %length 0.77)
Requesting sequence 28210716...	Extracting... 28210716-1 (e-value 4e-14, %id 26, %length 0.96)
Requesting sequence 119944375...	Extracting... 119944375-1 (e-value 5e-14, %id 34, %length 0.75)
Requesting sequence 90406853...	Extracting... 90406853-1 (e-value 5e-14, %id 35, %length 0.77)
Requesting sequence 68542791...	Extracting... 68542791-1 (e-value 5e-14, %id 29, %length 0.98)
Requesting sequence 78485903...	Extracting... 78485903-1 (e-value 7e-14, %id 31, %length 0.96)
Requesting sequence 68249452...	Extracting... 68249452-1 (e-value 9e-14, %id 30, %length 0.93)
Requesting sequence 90412062...	Extracting... 90412062-1 (e-value 9e-14, %id 32, %length 0.94)
Requesting sequence 42631175...	Extracting... 42631175-1 (e-value 9e-14, %id 30, %length 0.93)
Requesting sequence 16272798...	Extracting... 16272798-1 (e-value 1e-13, %id 31, %length 0.92)
Requesting sequence 91792189...	Extracting... 91792189-1 (e-value 1e-13, %id 32, %length 0.78)
Requesting sequence 77816226...	Extracting... 77816226-1 (e-value 1e-13, %id 31, %length 0.98)
Requesting sequence 82743614...	Extracting... 82743614-1 (e-value 2e-13, %id 31, %length 0.98)
Requesting sequence 51892330...	Extracting... 51892330-1 (e-value 2e-13, %id 29, %length 0.95)
Requesting sequence 56415007...	Extracting... 56415007-1 (e-value 3e-13, %id 34, %length 0.77)
Requesting sequence 46129171...	Extracting... 46129171-1 (e-value 3e-13, %id 32, %length 0.79)
Requesting sequence 113460830...	Extracting... 113460830-1 (e-value 5e-13, %id 33, %length 0.93)
Requesting sequence 68486299...	Extracting... 68486299-1 (e-value 6e-13, %id 26, %length 0.97)
Requesting sequence 119633720...	Extracting... 119633720-1 (e-value 6e-13, %id 27, %length 0.98)
Requesting sequence 15603586...	Extracting... 15603586-1 (e-value 6e-13, %id 30, %length 0.92)
Requesting sequence 119492190...	Extracting... 119492190-1 (e-value 6e-13, %id 30, %length 0.96)
Requesting sequence 115252516...	Extracting... 115252516-1 (e-value 6e-13, %id 27, %length 0.98)
Requesting sequence 110601185...	Extracting... 110601185-1 (e-value 6e-13, %id 32, %length 0.97)
Requesting sequence 50119413...	Extracting... 50119413-1 (e-value 8e-13, %id 34, %length 0.84)
Requesting sequence 110005495...	Extracting... 110005495-1 (e-value 8e-13, %id 31, %length 0.94)
Requesting sequence 39996238...	Extracting... 39996238-1 (e-value 1e-12, %id 32, %length 0.97)
Requesting sequence 86359062...	Extracting... 86359062-1 (e-value 1e-12, %id 30, %length 0.95)
Requesting sequence 108760545...	Extracting... 108760545-1 (e-value 1e-12, %id 33, %length 0.78)
Requesting sequence 88937257...	Extracting... 88937257-1 (e-value 2e-12, %id 32, %length 0.97)
Requesting sequence 118755975...	Extracting... 118755975-1 (e-value 2e-12, %id 28, %length 0.97)
Requesting sequence 19112995...	Extracting... 19112995-1 (e-value 2e-12, %id 28, %length 0.97)
Requesting sequence 56461202...	Extracting... 56461202-1 (e-value 3e-12, %id 36, %length 0.73)
Requesting sequence 15894375...	Extracting... 15894375-1 (e-value 3e-12, %id 32, %length 0.81)
Requesting sequence 118741372...	Extracting... 118741372-1 (e-value 4e-12, %id 33, %length 0.77)
Requesting sequence 75429745...	Extracting... 75429745-1 (e-value 4e-12, %id 32, %length 0.92)
Requesting sequence 56750262...	Extracting... 56750262-1 (e-value 5e-12, %id 28, %length 0.89)
Requesting sequence 78366675...	Extracting... 78366675-1 (e-value 9e-12, %id 30, %length 0.79)
Requesting sequence 21221619...	Extracting... 21221619-1 (e-value 9e-12, %id 29, %length 0.94)
Requesting sequence 94987212...	Extracting... 94987212-1 (e-value 1e-11, %id 30, %length 0.94)
Requesting sequence 117621461...	Extracting... 117621461-1 (e-value 1e-11, %id 34, %length 0.79)
Requesting sequence 89211609...	Extracting... 89211609-1 (e-value 1e-11, %id 34, %length 0.79)
Requesting sequence 119715036...	Extracting... 119715036-1 (e-value 1e-11, %id 33, %length 0.78)
Requesting sequence 29830217...	Extracting... 29830217-1 (e-value 2e-11, %id 30, %length 0.94)
Requesting sequence 117924024...	Extracting... 117924024-1 (e-value 2e-11, %id 32, %length 0.68)
Requesting sequence 77919945...	Extracting... 77919945-1 (e-value 2e-11, %id 34, %length 0.81)
Requesting sequence 108804160...	Extracting... 108804160-1 (e-value 3e-11, %id 29, %length 0.8)
Requesting sequence 114564320...	Extracting... 114564320-1 (e-value 3e-11, %id 32, %length 0.77)
Requesting sequence 115378707...	Extracting... 115378707-1 (e-value 3e-11, %id 33, %length 0.78)
Requesting sequence 75908316...	Extracting... 75908316-1 (e-value 3e-11, %id 28, %length 0.95)
Requesting sequence 118581713...	Extracting... 118581713-1 (e-value 4e-11, %id 35, %length 0.83)
Requesting sequence 17986598...	Extracting... 17986598-1 (e-value 4e-11, %id 28, %length 0.85)
Requesting sequence 55981580...	Extracting...(55981580-1 ignored - region of homology less than 0.5 * query length [e-value 4e-11, %id 46, %length 0.43])
Requesting sequence 46199549...	Extracting...(46199549-1 ignored - region of homology less than 0.5 * query length [e-value 6e-11, %id 46, %length 0.43])
Requesting sequence 23502580...	Extracting... 23502580-1 (e-value 6e-11, %id 28, %length 0.85)
Requesting sequence 90415221...	Extracting... 90415221-1 (e-value 6e-11, %id 32, %length 0.79)
Requesting sequence 114567379...	Extracting... 114567379-1 (e-value 6e-11, %id 30, %length 0.94)
Requesting sequence 119503481...	Extracting... 119503481-1 (e-value 7e-11, %id 32, %length 0.77)
Requesting sequence 86157473...	Extracting... 86157473-1 (e-value 7e-11, %id 33, %length 0.77)
Requesting sequence 118072669...	Extracting... 118072669-1 (e-value 1e-10, %id 32, %length 0.73)
Requesting sequence 77359620...	Extracting... 77359620-1 (e-value 1e-10, %id 29, %length 0.74)
Requesting sequence 67925953...	Extracting... 67925953-1 (e-value 1e-10, %id 27, %length 0.99)
Requesting sequence 86607891...	Extracting... 86607891-1 (e-value 2e-10, %id 31, %length 0.96)
Requesting sequence 114847868...	Extracting... 114847868-1 (e-value 2e-10, %id 31, %length 0.82)
Requesting sequence 46578782...	Extracting... 46578782-1 (e-value 2e-10, %id 31, %length 0.82)
Requesting sequence 116514422...	Extracting... 116514422-1 (e-value 2e-10, %id 32, %length 0.77)
Requesting sequence 15891217...	Extracting... 15891217-1 (e-value 2e-10, %id 30, %length 0.68)
Requesting sequence 49474638...	Extracting... 49474638-1 (e-value 2e-10, %id 31, %length 0.95)
Requesting sequence 13473376...	Extracting... 13473376-1 (e-value 3e-10, %id 27, %length 0.68)
Requesting sequence 16329651...	Extracting... 16329651-1 (e-value 3e-10, %id 28, %length 0.97)
Requesting sequence 119468968...	Extracting... 119468968-1 (e-value 4e-10, %id 27, %length 0.96)
Requesting sequence 34541465...	Extracting... 34541465-1 (e-value 4e-10, %id 30, %length 0.98)
Requesting sequence 21672669...	Extracting... 21672669-1 (e-value 4e-10, %id 31, %length 0.77)
Requesting sequence 88797321...	Extracting... 88797321-1 (e-value 4e-10, %id 29, %length 0.96)
Requesting sequence 17510857...	Extracting... 17510857-1 (e-value 5e-10, %id 27, %length 0.97)
Requesting sequence 87120699...	Extracting... 87120699-1 (e-value 5e-10, %id 25, %length 0.94)
Requesting sequence 88858287...	Extracting... 88858287-1 (e-value 5e-10, %id 31, %length 0.79)
Requesting sequence 49476102...	Extracting... 49476102-1 (e-value 5e-10, %id 33, %length 0.68)
Requesting sequence 118778863...	Extracting... 118778863-1 (e-value 5e-10, %id 30, %length 0.95)
Requesting sequence 91087065...	Extracting... 91087065-1 (e-value 6e-10, %id 27, %length 0.76)
Requesting sequence 92118988...	Extracting... 92118988-1 (e-value 6e-10, %id 37, %length 0.51)
Requesting sequence 113475547...	Extracting... 113475547-1 (e-value 6e-10, %id 29, %length 0.97)
Requesting sequence 15639681...	Extracting...(15639681-1 ignored - region of homology less than 0.5 * query length [e-value 8e-10, %id 40, %length 0.36])
Requesting sequence 68234333...	Extracting... 68234333-1 (e-value 8e-10, %id 31, %length 0.97)
Requesting sequence 58038701...	Extracting... 58038701-1 (e-value 8e-10, %id 29, %length 0.97)
Requesting sequence 104784224...	Extracting... 104784224-1 (e-value 8e-10, %id 29, %length 0.95)
Requesting sequence 85059986...	Extracting... 85059986-1 (e-value 1e-09, %id 33, %length 0.75)
Requesting sequence 110604563...	Extracting... 110604563-1 (e-value 1e-09, %id 26, %length 0.97)
Requesting sequence 88796763...	Extracting... 88796763-1 (e-value 1e-09, %id 31, %length 0.97)
Requesting sequence 32034574...	Extracting... 32034574-1 (e-value 1e-09, %id 31, %length 0.74)
Requesting sequence 58399145...	Extracting... 58399145-1 (e-value 1e-09, %id 28, %length 0.93)
Requesting sequence 50954368...	Extracting... 50954368-1 (e-value 2e-09, %id 30, %length 0.96)
Requesting sequence 51244498...	Extracting... 51244498-1 (e-value 2e-09, %id 27, %length 0.98)
Requesting sequence 53712254...	Extracting... 53712254-1 (e-value 2e-09, %id 29, %length 0.95)
Requesting sequence 118056915...	Extracting... 118056915-1 (e-value 2e-09, %id 28, %length 0.95)
Requesting sequence 110635525...	Extracting... 110635525-1 (e-value 2e-09, %id 25, %length 0.89)
Requesting sequence 94676528...	Extracting... 94676528-1 (e-value 4e-09, %id 30, %length 0.85)
Requesting sequence 17232317...	Extracting... 17232317-1 (e-value 4e-09, %id 35, %length 0.57)
Requesting sequence 94501453...	Extracting... 94501453-1 (e-value 4e-09, %id 32, %length 0.83)
Requesting sequence 26991879...	Extracting... 26991879-1 (e-value 5e-09, %id 29, %length 0.95)
Requesting sequence 86606251...	Extracting... 86606251-1 (e-value 7e-09, %id 32, %length 0.81)
Requesting sequence 50303025...	Extracting... 50303025-1 (e-value 7e-09, %id 28, %length 0.98)
Requesting sequence 90023157...	Extracting... 90023157-1 (e-value 7e-09, %id 33, %length 0.59)
Requesting sequence 83859835...	Extracting... 83859835-1 (e-value 7e-09, %id 33, %length 0.69)
Requesting sequence 60680431...	Extracting... 60680431-1 (e-value 9e-09, %id 31, %length 0.8)
Requesting sequence 83643935...	Extracting... 83643935-1 (e-value 9e-09, %id 30, %length 0.7)
Requesting sequence 607063...	Extracting...(607063-1 ignored - region of homology less than 0.5 * query length [e-value 1e-08, %id 43, %length 0.36])
Requesting sequence 82736754...	Extracting... 82736754-1 (e-value 2e-08, %id 29, %length 0.95)
Requesting sequence 116253718...	Extracting... 116253718-1 (e-value 2e-08, %id 29, %length 0.66)
Requesting sequence 92112157...	Extracting... 92112157-1 (e-value 2e-08, %id 27, %length 0.81)
Requesting sequence 50420365...	Extracting... 50420365-1 (e-value 2e-08, %id 27, %length 0.94)
Requesting sequence 70733256...	Extracting... 70733256-1 (e-value 2e-08, %id 29, %length 0.95)
Requesting sequence 114771669...	Extracting... 114771669-1 (e-value 2e-08, %id 32, %length 0.71)
Requesting sequence 53688158...	Extracting... 53688158-1 (e-value 2e-08, %id 26, %length 0.95)
Requesting sequence 22298523...	Extracting... 22298523-1 (e-value 3e-08, %id 24, %length 0.95)
Requesting sequence 83765382...	Extracting... 83765382-1 (e-value 3e-08, %id 29, %length 0.98)
Requesting sequence 85711161...	Extracting... 85711161-1 (e-value 3e-08, %id 29, %length 0.77)
Requesting sequence 85373865...	Extracting... 85373865-1 (e-value 3e-08, %id 29, %length 0.72)
Requesting sequence 119859447...	Extracting... 119859447-1 (e-value 3e-08, %id 27, %length 0.95)
Requesting sequence 27904856...	Extracting... 27904856-1 (e-value 3e-08, %id 32, %length 0.73)
Requesting sequence 87199988...	Extracting... 87199988-1 (e-value 3e-08, %id 29, %length 0.75)
Requesting sequence 94264006...	Extracting... 94264006-1 (e-value 4e-08, %id 32, %length 0.7)
Requesting sequence 113872409...	Extracting... 113872409-1 (e-value 4e-08, %id 28, %length 0.68)
Requesting sequence 29349666...	Extracting... 29349666-1 (e-value 6e-08, %id 30, %length 0.94)
Requesting sequence 119512448...	Extracting... 119512448-1 (e-value 6e-08, %id 32, %length 0.5)
Requesting sequence 83815655...	Extracting... 83815655-1 (e-value 6e-08, %id 29, %length 0.71)
Requesting sequence 15605381...	Extracting...(15605381-1 ignored - region of homology less than 0.5 * query length [e-value 6e-08, %id 42, %length 0.36])
Requesting sequence 18093092...	Extracting... 18093092-1 (e-value 6e-08, %id 26, %length 0.95)
Requesting sequence 119962860...	Extracting... 119962860-1 (e-value 6e-08, %id 29, %length 0.77)
Requesting sequence 95929909...	Extracting... 95929909-1 (e-value 6e-08, %id 28, %length 0.98)
Requesting sequence 76789388...	Extracting...(76789388-1 ignored - region of homology less than 0.5 * query length [e-value 6e-08, %id 42, %length 0.36])
Requesting sequence 77461659...	Extracting... 77461659-1 (e-value 8e-08, %id 28, %length 0.95)
Requesting sequence 114771436...	Extracting... 114771436-1 (e-value 8e-08, %id 27, %length 0.78)
Requesting sequence 74196670...	Extracting... 74196670-1 (e-value 8e-08, %id 26, %length 0.95)
Requesting sequence 76261861...	Extracting... 76261861-1 (e-value 8e-08, %id 27, %length 0.96)
Requesting sequence 15806815...	Extracting...(15806815-1 ignored - region of homology less than 0.5 * query length [e-value 8e-08, %id 34, %length 0.49])
Requesting sequence 118095886...	Extracting... 118095886-1 (e-value 1e-07, %id 27, %length 0.96)
Requesting sequence 114570993...	Extracting... 114570993-1 (e-value 1e-07, %id 28, %length 0.71)
Requesting sequence 72160776...	Extracting... 72160776-1 (e-value 1e-07, %id 28, %length 0.96)
Requesting sequence 42526503...	Extracting... 42526503-1 (e-value 1e-07, %id 26, %length 0.94)
Requesting sequence 89093763...	Extracting... 89093763-1 (e-value 1e-07, %id 28, %length 0.77)
Requesting sequence 114800291...	Extracting... 114800291-1 (e-value 1e-07, %id 26, %length 0.93)
Requesting sequence 39589611...	Extracting... 39589611-1 (e-value 1e-07, %id 27, %length 0.97)
Requesting sequence 119401586...	Extracting... 119401586-1 (e-value 1e-07, %id 29, %length 0.95)
Requesting sequence 116671411...	Extracting... 116671411-1 (e-value 1e-07, %id 34, %length 0.56)
Requesting sequence 118588340...	Extracting... 118588340-1 (e-value 2e-07, %id 28, %length 0.68)
Requesting sequence 57164141...	Extracting... 57164141-1 (e-value 2e-07, %id 26, %length 0.95)
Requesting sequence 24659317...	Extracting... 24659317-1 (e-value 2e-07, %id 27, %length 0.95)
Requesting sequence 88804744...	Extracting... 88804744-1 (e-value 2e-07, %id 30, %length 0.7)
Requesting sequence 21673874...	Extracting... 21673874-1 (e-value 2e-07, %id 28, %length 0.98)
Requesting sequence 15966511...	Extracting... 15966511-1 (e-value 2e-07, %id 27, %length 0.68)
Requesting sequence 85714400...	Extracting... 85714400-1 (e-value 2e-07, %id 30, %length 0.68)
Requesting sequence 45551156...	Extracting... 45551156-1 (e-value 2e-07, %id 27, %length 0.95)
Requesting sequence 24659304...	Extracting... 24659304-1 (e-value 2e-07, %id 27, %length 0.95)
Requesting sequence 15834643...	Extracting...(15834643-1 ignored - region of homology less than 0.5 * query length [e-value 2e-07, %id 50, %length 0.31])
Requesting sequence 56551111...	Extracting... 56551111-1 (e-value 3e-07, %id 27, %length 0.92)
Requesting sequence 86751391...	Extracting... 86751391-1 (e-value 3e-07, %id 28, %length 0.68)
Requesting sequence 118594868...	Extracting... 118594868-1 (e-value 3e-07, %id 29, %length 0.72)
Requesting sequence 118048478...	Extracting... 118048478-1 (e-value 3e-07, %id 31, %length 0.7)
Requesting sequence 114658448...	Extracting... 114658448-1 (e-value 4e-07, %id 27, %length 0.95)
Requesting sequence 115497956...	Extracting... 115497956-1 (e-value 4e-07, %id 27, %length 0.95)
Requesting sequence 119025307...	Extracting... 119025307-1 (e-value 4e-07, %id 29, %length 0.74)
Requesting sequence 114706593...	Extracting... 114706593-1 (e-value 4e-07, %id 26, %length 0.96)
Requesting sequence 116053375...	Extracting... 116053375-1 (e-value 4e-07, %id 27, %length 0.94)
Requesting sequence 94417703...	Extracting... 94417703-1 (e-value 4e-07, %id 27, %length 0.94)
Requesting sequence 119896788...	Extracting...(119896788-1 ignored - region of homology less than 0.5 * query length [e-value 4e-07, %id 42, %length 0.34])
Requesting sequence 59802286...	Extracting... 59802286-1 (e-value 4e-07, %id 29, %length 0.77)
Requesting sequence 15600421...	Extracting... 15600421-1 (e-value 4e-07, %id 27, %length 0.94)
Requesting sequence 66043586...	Extracting... 66043586-1 (e-value 4e-07, %id 27, %length 0.95)
Requesting sequence 53717902...	Extracting... 53717902-1 (e-value 5e-07, %id 30, %length 0.64)
Requesting sequence 100122983...	Extracting... 100122983-1 (e-value 5e-07, %id 30, %length 0.64)
Requesting sequence 83312323...	Extracting... 83312323-1 (e-value 5e-07, %id 31, %length 0.72)
Requesting sequence 53724551...	Extracting... 53724551-1 (e-value 5e-07, %id 30, %length 0.64)
Requesting sequence 78699422...	Extracting... 78699422-1 (e-value 5e-07, %id 30, %length 0.95)
Requesting sequence 89362705...	Extracting... 89362705-1 (e-value 5e-07, %id 31, %length 0.68)
Requesting sequence 91785580...	Extracting...(91785580-1 ignored - region of homology less than 0.5 * query length [e-value 6e-07, %id 44, %length 0.33])
Requesting sequence 113943231...	Extracting... 113943231-1 (e-value 6e-07, %id 31, %length 0.69)
Requesting sequence 90426283...	Extracting... 90426283-1 (e-value 6e-07, %id 29, %length 0.7)
Requesting sequence 29653427...	Extracting... 29653427-1 (e-value 6e-07, %id 27, %length 0.97)
Requesting sequence 88602111...	Extracting... 88602111-1 (e-value 6e-07, %id 27, %length 0.77)
Requesting sequence 114321685...	Extracting... 114321685-1 (e-value 6e-07, %id 29, %length 0.78)
Requesting sequence 83718949...	Extracting... 83718949-1 (e-value 6e-07, %id 30, %length 0.64)
Requesting sequence 15214583...	Extracting... 15214583-1 (e-value 8e-07, %id 27, %length 0.95)
Requesting sequence 5453746...	Extracting... 5453746-1 (e-value 8e-07, %id 27, %length 0.95)
Requesting sequence 94986003...	Extracting...(94986003-1 ignored - region of homology less than 0.5 * query length [e-value 8e-07, %id 36, %length 0.43])
Requesting sequence 83750596...	Extracting... 83750596-1 (e-value 8e-07, %id 28, %length 0.76)
Requesting sequence 114778489...	Extracting... 114778489-1 (e-value 8e-07, %id 28, %length 0.72)
Requesting sequence 42522724...	Extracting...(42522724-1 ignored - region of homology less than 0.5 * query length [e-value 1e-06, %id 39, %length 0.36])
Requesting sequence 39937514...	Extracting... 39937514-1 (e-value 1e-06, %id 26, %length 0.71)
Requesting sequence 77953082...	Extracting... 77953082-1 (e-value 1e-06, %id 27, %length 0.96)
Requesting sequence 114658450...	Extracting... 114658450-1 (e-value 1e-06, %id 27, %length 0.95)
Requesting sequence 114658453...	Extracting... 114658453-1 (e-value 1e-06, %id 27, %length 0.87)
Requesting sequence 88706370...	Extracting... 88706370-1 (e-value 1e-06, %id 27, %length 0.85)
Requesting sequence 45187488...	Extracting... 45187488-1 (e-value 1e-06, %id 27, %length 0.89)
Requesting sequence 54635764...	Extracting... 54635764-1 (e-value 1e-06, %id 27, %length 0.94)
Requesting sequence 38233458...	Extracting... 38233458-1 (e-value 1e-06, %id 31, %length 0.6)
Requesting sequence 90418954...	Extracting... 90418954-1 (e-value 1e-06, %id 30, %length 0.7)
Requesting sequence 71735570...	Extracting... 71735570-1 (e-value 2e-06, %id 25, %length 0.95)
Requesting sequence 73951703...	Extracting... 73951703-1 (e-value 2e-06, %id 26, %length 0.95)
Requesting sequence 75676915...	Extracting... 75676915-1 (e-value 2e-06, %id 33, %length 0.68)
Requesting sequence 110598191...	Extracting... 110598191-1 (e-value 2e-06, %id 27, %length 0.83)
Requesting sequence 91219490...	Extracting... 91219490-1 (e-value 2e-06, %id 28, %length 0.58)
Requesting sequence 87302128...	Extracting... 87302128-1 (e-value 2e-06, %id 28, %length 0.59)
Requesting sequence 110637107...	Extracting... 110637107-1 (e-value 2e-06, %id 28, %length 0.97)
Requesting sequence 23015558...	Extracting... 23015558-1 (e-value 3e-06, %id 30, %length 0.7)
Requesting sequence 24213947...	Extracting... 24213947-1 (e-value 3e-06, %id 35, %length 0.64)
Requesting sequence 115526763...	Extracting... 115526763-1 (e-value 3e-06, %id 26, %length 0.97)
Requesting sequence 117927374...	Extracting... 117927374-1 (e-value 3e-06, %id 28, %length 0.79)
Requesting sequence 108875040...	Extracting... 108875040-1 (e-value 4e-06, %id 28, %length 0.6)
Requesting sequence 55642465...	Extracting... 55642465-1 (e-value 4e-06, %id 28, %length 0.78)
Requesting sequence 86135439...	Extracting... 86135439-1 (e-value 4e-06, %id 28, %length 0.94)
Requesting sequence 108873075...	Extracting... 108873075-1 (e-value 4e-06, %id 28, %length 0.6)
Requesting sequence 114658455...	Extracting... 114658455-1 (e-value 4e-06, %id 28, %length 0.78)
Requesting sequence 37520328...	Extracting...(37520328-1 ignored - region of homology less than 0.5 * query length [e-value 5e-06, %id 35, %length 0.41])
Requesting sequence 94270163...	Extracting...(94270163-1 ignored - region of homology less than 0.5 * query length [e-value 5e-06, %id 36, %length 0.49])
Requesting sequence 13470606...	Extracting... 13470606-1 (e-value 5e-06, %id 30, %length 0.66)
Requesting sequence 120437502...	Extracting... 120437502-1 (e-value 5e-06, %id 25, %length 0.96)
Requesting sequence 50365066...	Extracting... 50365066-1 (e-value 7e-06, %id 28, %length 0.97)
Requesting sequence 89055877...	Extracting... 89055877-1 (e-value 9e-06, %id 30, %length 0.69)
Requesting sequence 15793342...	Extracting... 15793342-1 (e-value 9e-06, %id 27, %length 0.77)
Requesting sequence 17544808...	Extracting... 17544808-1 (e-value 9e-06, %id 30, %length 0.52)
Requesting sequence 74318742...	Extracting...(74318742-1 ignored - region of homology less than 0.5 * query length [e-value 9e-06, %id 33, %length 0.45])
Requesting sequence 56697792...	Extracting...(56697792-1 ignored - region of homology less than 0.5 * query length [e-value 9e-06, %id 40, %length 0.36])
Requesting sequence 1169750...	Extracting... 1169750-1 (e-value 9e-06, %id 28, %length 0.95)
Requesting sequence 50549619...	Extracting... 50549619-1 (e-value 1e-05, %id 30, %length 0.9)
Requesting sequence 86742720...	Extracting... 86742720-1 (e-value 1e-05, %id 25, %length 0.92)
Requesting sequence 40063288...	Extracting... 40063288-1 (e-value 1e-05, %id 28, %length 0.79)
Requesting sequence 83592420...	Extracting... 83592420-1 (e-value 1e-05, %id 28, %length 0.68)
Requesting sequence 78779447...	Extracting... 78779447-1 (e-value 1e-05, %id 27, %length 0.95)
Requesting sequence 119357145...	Extracting... 119357145-1 (e-value 1e-05, %id 27, %length 0.96)
Requesting sequence 52424530...	Extracting...(52424530-1 ignored - region of homology less than 0.5 * query length [e-value 1e-05, %id 36, %length 0.43])
Requesting sequence 116328734...	Extracting... 116328734-1 (e-value 2e-05, %id 36, %length 0.5)
Requesting sequence 119880168...	Extracting... 119880168-1 (e-value 2e-05, %id 31, %length 0.69)
Requesting sequence 85708455...	Extracting... 85708455-1 (e-value 2e-05, %id 30, %length 0.71)
Requesting sequence 16127475...	Extracting... 16127475-1 (e-value 2e-05, %id 29, %length 0.72)
Requesting sequence 88801299...	Extracting... 88801299-1 (e-value 2e-05, %id 25, %length 0.94)
Requesting sequence 118748585...	Extracting... 118748585-1 (e-value 2e-05, %id 24, %length 0.97)
Requesting sequence 83746010...	Extracting... 83746010-1 (e-value 2e-05, %id 30, %length 0.52)
Requesting sequence 113934140...	Extracting... 113934140-1 (e-value 2e-05, %id 28, %length 0.78)
Requesting sequence 114707729...	Extracting... 114707729-1 (e-value 3e-05, %id 30, %length 0.74)
Requesting sequence 15618672...	Extracting... 15618672-1 (e-value 3e-05, %id 26, %length 0.57)
Requesting sequence 29840749...	Extracting...(29840749-1 ignored - region of homology less than 0.5 * query length [e-value 3e-05, %id 34, %length 0.46])
Requesting sequence 53803083...	Extracting... 53803083-1 (e-value 3e-05, %id 28, %length 0.75)
Requesting sequence 33594919...	Extracting... 33594919-1 (e-value 3e-05, %id 32, %length 0.51)
Requesting sequence 15826993...	Extracting...(15826993-1 ignored - region of homology less than 0.5 * query length [e-value 3e-05, %id 35, %length 0.44])
Requesting sequence 88855680...	Extracting... 88855680-1 (e-value 3e-05, %id 26, %length 0.77)
Requesting sequence 20095041...	Extracting... 20095041-1 (e-value 3e-05, %id 27, %length 0.82)
Requesting sequence 54293575...	Extracting... 54293575-1 (e-value 3e-05, %id 27, %length 0.81)
Requesting sequence 91978639...	Extracting... 91978639-1 (e-value 3e-05, %id 27, %length 0.68)
Requesting sequence 99081744...	Extracting...(99081744-1 ignored - region of homology less than 0.5 * query length [e-value 3e-05, %id 37, %length 0.35])
Requesting sequence 28872339...	Extracting... 28872339-1 (e-value 5e-05, %id 24, %length 0.95)
Requesting sequence 33599194...	Extracting... 33599194-1 (e-value 5e-05, %id 32, %length 0.51)
Requesting sequence 119475440...	Extracting... 119475440-1 (e-value 5e-05, %id 26, %length 0.79)
Requesting sequence 57239218...	Extracting... 57239218-1 (e-value 5e-05, %id 29, %length 0.7)
Requesting sequence 94496500...	Extracting... 94496500-1 (e-value 5e-05, %id 27, %length 0.78)
Requesting sequence 33593988...	Extracting... 33593988-1 (e-value 6e-05, %id 32, %length 0.51)
Requesting sequence 118040276...	Extracting...(118040276-1 ignored - region of homology less than 0.5 * query length [e-value 6e-05, %id 39, %length 0.33])
Requesting sequence 90590729...	Extracting... 90590729-1 (e-value 8e-05, %id 26, %length 0.81)
Requesting sequence 27376638...	Extracting... 27376638-1 (e-value 8e-05, %id 27, %length 0.7)
Requesting sequence 88949031...	Extracting... 88949031-1 (e-value 8e-05, %id 27, %length 0.78)
Requesting sequence 67937864...	Extracting... 67937864-1 (e-value 8e-05, %id 25, %length 0.81)
Requesting sequence 67155415...	Extracting... 67155415-1 (e-value 8e-05, %id 27, %length 0.95)
Requesting sequence 86140038...	Extracting...(86140038-1 ignored - region of homology less than 0.5 * query length [e-value 0.0001, %id 39, %length 0.35])
Requesting sequence 89358131...	Extracting... 89358131-1 (e-value 0.0001, %id 32, %length 0.54)
Requesting sequence 19354031...	Extracting... 19354031-1 (e-value 0.0001, %id 27, %length 0.69)
Requesting sequence 62185563...	Extracting...(62185563-1 ignored - region of homology less than 0.5 * query length [e-value 0.0001, %id 34, %length 0.35])
Requesting sequence 56416789...	Extracting... 56416789-1 (e-value 0.0001, %id 26, %length 0.78)
Requesting sequence 46136531...	Extracting... 46136531-1 (e-value 0.0001, %id 25, %length 0.81)
Requesting sequence 84517794...	Extracting... 84517794-1 (e-value 0.0001, %id 25, %length 0.6)
Requesting sequence 113866280...	Extracting... 113866280-1 (e-value 0.0001, %id 28, %length 0.6)
Requesting sequence 118602934...	Extracting... 118602934-1 (e-value 0.0001, %id 26, %length 0.87)
Requesting sequence 41407021...	Extracting...(41407021-1 ignored - region of homology less than 0.5 * query length [e-value 0.0001, %id 31, %length 0.44])
Requesting sequence 88812443...	Extracting... 88812443-1 (e-value 0.0001, %id 25, %length 0.68)
Requesting sequence 40062593...	Extracting... 40062593-1 (e-value 0.0001, %id 27, %length 0.73)
Requesting sequence 34762343...	Extracting... 34762343-1 (e-value 0.0001, %id 29, %length 0.84)
Requesting sequence 15604325...	Extracting... 15604325-1 (e-value 0.0001, %id 30, %length 0.54)
Requesting sequence 118465305...	Extracting...(118465305-1 ignored - region of homology less than 0.5 * query length [e-value 0.0001, %id 31, %length 0.44])
Requesting sequence 47573140...	Extracting...(47573140-1 ignored - region of homology less than 0.5 * query length [e-value 0.0001, %id 39, %length 0.35])
Requesting sequence 54296612...	Extracting... 54296612-1 (e-value 0.0001, %id 26, %length 0.81)
Requesting sequence 116071070...	Extracting...(116071070-1 ignored - region of homology less than 0.5 * query length [e-value 0.0002, %id 36, %length 0.39])
Requesting sequence 9971879...	Extracting... 9971879-1 (e-value 0.0002, %id 27, %length 0.93)
Requesting sequence 69934995...	Extracting... 69934995-1 (e-value 0.0002, %id 27, %length 0.66)
Requesting sequence 119387513...	Extracting... 119387513-1 (e-value 0.0002, %id 27, %length 0.66)
Requesting sequence 110679293...	Extracting...(110679293-1 ignored - region of homology less than 0.5 * query length [e-value 0.0002, %id 36, %length 0.35])
Requesting sequence 118032248...	Extracting...(118032248-1 ignored - region of homology less than 0.5 * query length [e-value 0.0002, %id 39, %length 0.34])
Requesting sequence 71083295...	Extracting... 71083295-1 (e-value 0.0002, %id 23, %length 0.97)
Requesting sequence 31544583...	Extracting... 31544583-1 (e-value 0.0002, %id 23, %length 0.93)
Requesting sequence 88607506...	Extracting...(88607506-1 ignored - region of homology less than 0.5 * query length [e-value 0.0002, %id 40, %length 0.36])
Requesting sequence 19704237...	Extracting... 19704237-1 (e-value 0.0002, %id 29, %length 0.84)
Requesting sequence 52840830...	Extracting... 52840830-1 (e-value 0.0002, %id 26, %length 0.81)
Requesting sequence 83949845...	Extracting...(83949845-1 ignored - region of homology less than 0.5 * query length [e-value 0.0002, %id 41, %length 0.36])
Requesting sequence 83855915...	Extracting... 83855915-1 (e-value 0.0002, %id 28, %length 0.76)
Requesting sequence 15677919...	Extracting... 15677919-1 (e-value 0.0003, %id 28, %length 0.77)
Requesting sequence 25027511...	Extracting... 25027511-1 (e-value 0.0004, %id 26, %length 0.73)
Requesting sequence 118700607...	Extracting...(118700607-1 ignored - region of homology less than 0.5 * query length [e-value 0.0004, %id 35, %length 0.33])
Requesting sequence 115353131...	Extracting...(115353131-1 ignored - region of homology less than 0.5 * query length [e-value 0.0004, %id 35, %length 0.33])
Requesting sequence 84356016...	Extracting...(84356016-1 ignored - region of homology less than 0.5 * query length [e-value 0.0004, %id 35, %length 0.33])
Requesting sequence 114332268...	Extracting...(114332268-1 ignored - region of homology less than 0.5 * query length [e-value 0.0004, %id 30, %length 0.42])
Requesting sequence 114763000...	Extracting... 114763000-1 (e-value 0.0004, %id 31, %length 0.71)
Requesting sequence 83369679...	Extracting...(83369679-1 ignored - region of homology less than 0.5 * query length [e-value 0.0004, %id 38, %length 0.33])
Requesting sequence 107023966...	Extracting...(107023966-1 ignored - region of homology less than 0.5 * query length [e-value 0.0004, %id 35, %length 0.33])
Requesting sequence 67544023...	Extracting...(67544023-1 ignored - region of homology less than 0.5 * query length [e-value 0.0005, %id 34, %length 0.33])
Requesting sequence 15678232...	Extracting... 15678232-1 (e-value 0.0005, %id 27, %length 0.83)
Requesting sequence 15608132...	Extracting...(15608132-1 ignored - region of homology less than 0.5 * query length [e-value 0.0005, %id 35, %length 0.44])
Requesting sequence 31792183...	Extracting...(31792183-1 ignored - region of homology less than 0.5 * query length [e-value 0.0005, %id 35, %length 0.44])
Requesting sequence 76785247...	Extracting...(76785247-1 ignored - region of homology less than 0.5 * query length [e-value 0.0005, %id 35, %length 0.44])
Requesting sequence 15840417...	Extracting...(15840417-1 ignored - region of homology less than 0.5 * query length [e-value 0.0005, %id 35, %length 0.44])
Requesting sequence 85706849...	Extracting...(85706849-1 ignored - region of homology less than 0.5 * query length [e-value 0.0005, %id 37, %length 0.36])
Requesting sequence 23466107...	Extracting... 23466107-1 (e-value 0.0005, %id 26, %length 0.77)
Requesting sequence 91215100...	Extracting... 91215100-1 (e-value 0.0005, %id 33, %length 0.54)
Requesting sequence 84363154...	Extracting...(84363154-1 ignored - region of homology less than 0.5 * query length [e-value 0.0007, %id 35, %length 0.33])
Requesting sequence 78067851...	Extracting...(78067851-1 ignored - region of homology less than 0.5 * query length [e-value 0.0007, %id 33, %length 0.33])
Requesting sequence 51473649...	Extracting...(51473649-1 ignored - region of homology less than 0.5 * query length [e-value 0.0007, %id 37, %length 0.32])
Requesting sequence 118720448...	Extracting...(118720448-1 ignored - region of homology less than 0.5 * query length [e-value 0.0007, %id 32, %length 0.35])
Requesting sequence 69935882...	Extracting... 69935882-1 (e-value 0.0007, %id 32, %length 0.7)
Requesting sequence 84515306...	Extracting...(84515306-1 ignored - region of homology less than 0.5 * query length [e-value 0.0009, %id 37, %length 0.36])
Requesting sequence 73667111...	Extracting...(73667111-1 ignored - region of homology less than 0.5 * query length [e-value 0.0009, %id 40, %length 0.35])
Requesting sequence 67917687...	Extracting... 67917687-1 (e-value 0.0009, %id 25, %length 0.75)
Requesting sequence 88711869...	Extracting... 88711869-1 (e-value 0.0009, %id 28, %length 0.81)
Requesting sequence 118761353...	Extracting... 118761353-1 (e-value 0.0009, %id 25, %length 0.77)
Requesting sequence 118376904...	Extracting... 118376904-1 (e-value 0.0009, %id 31, %length 0.53)
Requesting sequence 78188869...	Extracting... 78188869-1 (e-value 0.0009, %id 24, %length 0.93)
Requesting sequence 89897826...	Extracting...(89897826-1 ignored - region of homology less than 0.5 * query length [e-value 0.0009, %id 33, %length 0.4])
Requesting sequence 116059751...	Extracting...(116059751-1 ignored - region of homology less than 0.5 * query length [e-value 0.0009, %id 38, %length 0.34])
Requesting sequence 89069694...	Extracting... 89069694-1 (e-value 0.001, %id 28, %length 0.75)
Requesting sequence 83371744...	Extracting...(83371744-1 ignored - region of homology less than 0.5 * query length [e-value 0.001, %id 38, %length 0.33])
Requesting sequence 116073112...	Extracting... 116073112-1 (e-value 0.001, %id 30, %length 0.54)
Requesting sequence 103486808...	Extracting... 103486808-1 (e-value 0.001, %id 30, %length 0.55)
Requesting sequence 84701844...	Extracting... 84701844-1 (e-value 0.001, %id 31, %length 0.54)
Requesting sequence 68171491...	Extracting...(68171491-1 ignored - region of homology less than 0.5 * query length [e-value 0.001, %id 39, %length 0.35])
Requesting sequence 30248088...	Extracting...(30248088-1 ignored - region of homology less than 0.5 * query length [e-value 0.001, %id 32, %length 0.35])
Requesting sequence 113874718...	Extracting... 113874718-1 (e-value 0.001, %id 31, %length 0.5)
Requesting sequence 68548957...	Extracting... 68548957-1 (e-value 0.001, %id 26, %length 0.83)
Requesting sequence 22087556...	Extracting...(22087556-1 ignored - region of homology less than 0.5 * query length [e-value 0.001, %id 35, %length 0.35])
Requesting sequence 86143733...	Extracting... 86143733-1 (e-value 0.001, %id 28, %length 0.74)
Requesting sequence 77462443...	Extracting...(77462443-1 ignored - region of homology less than 0.5 * query length [e-value 0.001, %id 38, %length 0.33])
Requesting sequence 88657993...	Extracting...(88657993-1 ignored - region of homology less than 0.5 * query length [e-value 0.001, %id 39, %length 0.35])
Requesting sequence 114327758...	Extracting... 114327758-1 (e-value 0.001, %id 26, %length 0.72)
Requesting sequence 94493899...	Extracting... 94493899-1 (e-value 0.001, %id 24, %length 0.96)
Requesting sequence 115399848...	Extracting...(115399848-1 ignored - region of homology less than 0.5 * query length [e-value 0.002, %id 37, %length 0.34])
Requesting sequence 13508087...	Extracting...(13508087-1 ignored - region of homology less than 0.5 * query length [e-value 0.002, %id 37, %length 0.29])
Requesting sequence 28493634...	Extracting...(28493634-1 ignored - region of homology less than 0.5 * query length [e-value 0.002, %id 29, %length 0.35])
Requesting sequence 28393074...	Extracting...(28393074-1 ignored - region of homology less than 0.5 * query length [e-value 0.002, %id 33, %length 0.36])
Requesting sequence 18416944...	Extracting...(18416944-1 ignored - region of homology less than 0.5 * query length [e-value 0.002, %id 33, %length 0.36])
Requesting sequence 9955549...	Extracting...(9955549-1 ignored - region of homology less than 0.5 * query length [e-value 0.002, %id 33, %length 0.36])
Requesting sequence 91205708...	Extracting...(91205708-1 ignored - region of homology less than 0.5 * query length [e-value 0.002, %id 32, %length 0.49])
Requesting sequence 119877669...	Extracting... 119877669-1 (e-value 0.002, %id 32, %length 0.62)
Requesting sequence 71909740...	Extracting... 71909740-1 (e-value 0.003, %id 30, %length 0.68)
Requesting sequence 48428747...	Extracting...(48428747-1 ignored - region of homology less than 0.5 * query length [e-value 0.003, %id 40, %length 0.33])
Requesting sequence 111022597...	Extracting... 111022597-1 (e-value 0.003, %id 22, %length 0.71)
Requesting sequence 82701214...	Extracting...(82701214-1 ignored - region of homology less than 0.5 * query length [e-value 0.003, %id 34, %length 0.33])
Requesting sequence 88939404...	Extracting... 88939404-1 (e-value 0.003, %id 28, %length 0.72)
Requesting sequence 71297137...	Extracting...(71297137-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 38, %length 0.35])
Requesting sequence 84497784...	Extracting... 84497784-1 (e-value 0.004, %id 27, %length 0.76)
Requesting sequence 84683395...	Extracting...(84683395-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 38, %length 0.33])
Requesting sequence 89341462...	Extracting...(89341462-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 32, %length 0.34])
Requesting sequence 78213471...	Extracting...(78213471-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 36, %length 0.37])
Requesting sequence 102191739...	Extracting...(102191739-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 34, %length 0.32])
Requesting sequence 94309120...	Extracting... 94309120-1 (e-value 0.004, %id 30, %length 0.51)
Requesting sequence 73539924...	Extracting... 73539924-1 (e-value 0.004, %id 25, %length 0.68)
Requesting sequence 12045099...	Extracting...(12045099-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 47, %length 0.21])
Requesting sequence 110835465...	Extracting...(110835465-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 36, %length 0.34])
Requesting sequence 72382539...	Extracting...(72382539-1 ignored - region of homology less than 0.5 * query length [e-value 0.004, %id 29, %length 0.49])
Requesting sequence 87124818...	Extracting...(87124818-1 ignored - region of homology less than 0.5 * query length [e-value 0.006, %id 36, %length 0.33])
Requesting sequence 28198704...	Extracting... 28198704-1 (e-value 0.006, %id 26, %length 0.81)
Requesting sequence 71018447...	Extracting... 71018447-1 (e-value 0.006, %id 23, %length 0.9)
Requesting sequence 118734760...	Extracting...(118734760-1 ignored - region of homology less than 0.5 * query length [e-value 0.006, %id 39, %length 0.33])
Requesting sequence 56477350...	Extracting...(56477350-1 ignored - region of homology less than 0.5 * query length [e-value 0.006, %id 36, %length 0.33])
Requesting sequence 15963828...	Extracting... 15963828-1 (e-value 0.007, %id 26, %length 0.69)
Requesting sequence 50260554...	Extracting... 50260554-1 (e-value 0.007, %id 23, %length 0.88)
Requesting sequence 71275761...	Extracting... 71275761-1 (e-value 0.007, %id 26, %length 0.81)
Requesting sequence 84500266...	Extracting...(84500266-1 ignored - region of homology less than 0.5 * query length [e-value 0.007, %id 39, %length 0.35])
Requesting sequence 118619765...	Extracting... 118619765-1 (e-value 0.010, %id 24, %length 0.78)
Requesting sequence 71892038...	Extracting... 71892038-1 (e-value 0.010, %id 33, %length 0.56)
Requesting sequence 118470364...	Extracting... 118470364-1 (e-value 0.010, %id 22, %length 0.75)
Requesting sequence 69291937...	Extracting...(69291937-1 ignored - region of homology less than 0.5 * query length [e-value 0.010, %id 36, %length 0.34])
Requesting sequence 84714525...	Extracting...(84714525-1 ignored - region of homology less than 0.5 * query length [e-value 0.010, %id 32, %length 0.35])
Requesting sequence 83944531...	Extracting...(83944531-1 ignored - region of homology less than 0.5 * query length [e-value 0.010, %id 33, %length 0.35])
Requesting sequence 71897968...	Extracting... 71897968-1 (e-value 0.010, %id 26, %length 0.81)



Removing identical sequences...
	--Renaming 1ydmC.input to 1ydmC.input_with_identicals--
	command:  mv -f 1ydmC.input 1ydmC.input_with_identicals
	command:  DetectandRemoveIdenticals2.pl 1ydmC.input_with_identicals 1ydmC.input query_1ydmC > 1ydmC.identicals
*********************************

	output:
15924540-1
5453746-1
24659304-1
115252516-1
116515920-1
110643059-1
109647345-1
24659317-1
119387513-1
9 sequences removed (2% of original)



Removing short sequences...
	--Renaming 1ydmC.input to 1ydmC.input_with_shortseqs--
	command:  mv -f 1ydmC.input 1ydmC.input_with_shortseqs
	command:  DetectandRemoveShortSeqs.pl 1ydmC.input_with_shortseqs 1ydmC.input 0.8 query_1ydmC > 1ydmC.shortseqs
*********************************

	output:
0 sequences removed (0% of original)



Generating the alignment...
	command:  clustalw -align -infile=1ydmC.input -output=gcg -outfile=1ydmC.msf -quicktree

Removing fragments...
	--Renaming 1ydmC.input to 1ydmC.input_with_fragments--
	command:  mv -f 1ydmC.input 1ydmC.input_with_fragments
	--Renaming 1ydmC.msf to 1ydmC.msf_with_fragments--
	command:  mv -f 1ydmC.msf 1ydmC.msf_with_fragments
	command:  DetectFragments.pl 1ydmC.msf_with_fragments 0.9 query_1ydmC > 1ydmC.fragments
	command:  remove_seqs.pl 1ydmC.input_with_fragments 1ydmC.fragments 1ydmC.input
	output:
20095041-1
60680431-1
77745401-1
114658455-1
84701844-1
19354031-1
83312323-1
77414930-1

8 sequences removed (2% of original)


Generating the alignment...
	command:  clustalw -align -infile=1ydmC.input -output=gcg -outfile=1ydmC.msf -quicktree

Running Trace...

*********************************

	command:  /home/davidk/ET/etc -p 1ydmC.msf -o ET_1ydmC -m blosum62 -groups -c -x query_1ydmC query_1ydmC.pdb -realval

reference sequence: query_1ydmC 
Gap will be counted as 21st amino acid.
 402 sequences of length 307 
the sequence reading done.
reading the pdb file ...
 reading pdb successful 
processing the pdb file done.
calculating pairwise sequence identity
Starting cluster report generation... 
	number of contacts  = 650 
Cluster report  done. Time:       2.01 s.

	command:  makeetvx3.sh 1ydmC query_1ydmC.pdb ET_1ydmC.ranks ET_1ydmC.pss.nhx ET_1ydmC.cluster_report.summary > 1ydmC.etvx
	command:  treedescript.pl ET_1ydmC.pss.nhx 1ydmC.blast ET_1ydmC.annot.pss.nhx

Reordering alignment to match the tree (as displayed by Forester)...
	--Renaming 1ydmC.msf to 1ydmC.unordered.msf--
	command:  mv -f 1ydmC.msf 1ydmC.unordered.msf
	command:  reorder_alignment_to_tree2.pl ET_1ydmC.pss.nhx 1ydmC.unordered.msf 1ydmC.ordered.msf
	--Renaming 1ydmC.ordered.msf to 1ydmC.msf--
	command:  mv -f 1ydmC.ordered.msf 1ydmC.msf


Done!  EasyTrace completed with 0 warnings.


